The detailed information of tRNA gene sequence


Sequence ID>CHL1861004979
Genome IDLC375846
Search identical group
Phylum/ClassViridiplantae
SpeciesSisymbrium irio J04 (LC375846)
Start position on genome 46815
End posion on genome 47211
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
aagcaaaaag
tRNA gene sequence 
GGGGATATGGCGGAATTGGTAGACGCTACGGACTTAATATCCGTTGACTTTTAAAATCGT
GAGGGTTCAAGTCCCTCTATCCCCAgcc
Downstream region at tRNA end position 
ccactccccc
Secondary structure (Cloverleaf model)
>CHL1861004979	Leu	TAA
                   g      Agcc ccactccccc
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    T       G G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     TGACTTTTAAAATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       T *
                    T A A
intron: position=38, length=312 (in A-loop)
TGGATTGAGCCTTGGTATGGAAACCTACTAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATTAACA
ATGGGCAATCCTGAGCCAAATCCTGGGTTACGCGAACAAACCAGAGTTTAGAAAGCGGGATAGGTGCAGA
GACTCAATGGAAGCTGTTCTAACAAATGGAGTTCACTACCTTGTGTTGATCAAATGATTCACTTCATAGT
CTGATAGATCCTTGGTTGAACTTATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATA
CTGACAACAATGAAATTTATAGTAAGATGAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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