The detailed information of tRNA gene sequence


Sequence ID>CHL1899200004
Genome IDKC117177
Search identical group
Phylum/ClassViridiplantae
SpeciesEquisetum hyemale (KC117177)
Start position on genome 96292
End posion on genome 97038
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
cctgggcaca
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGGAGCGCCGCCCTTGCAAGGCGGATGTCAGCGGTTCGAG
TCCGCTTGTCTCCAgcc
Downstream region at tRNA end position 
cgtgatccga
Secondary structure (Cloverleaf model)
>CHL1899200004	Cys	GCA
                   a      Agcc cgtgatccga
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T + G
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A G        G     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A *
                  T       A
                    T G C
intron: position=39, length=674 (in A-loop)
TTGGGTCGTTGCGCTTACGGGTTGGATGCCTAATTGTCCAGGCAGTAATGATAGTATCTCTTACCTAAAC
CGGTGGCTAACTCTTCTCCAGGAATGGGGAAAAGGACTGGAACATGCCACTGAAAAACTCTATTGAGACA
AAGATGCGTTGTCATAAATGTAGAGAAGGTAGGATGGGTAGTTGGTTAGATCTAGTCCAGATCGTACATG
AGCAATAGTTAGAGTCGGCGGCTCTACCGGGGCGACCTCATTCAGAATCCCTGGGGAAGAGAATTAGGCT
GGCCCTTGCGAACAGCTTAATGCACTATCTCTCTTCAACTCCTGAAGCACACTGTGGCGAAAGGAACAAG
AAGCCATGGACCGACCCCATCGTTTCCATCCCGTAGGAACTACGAGATCGCCCTATGGATGCCAAAAAGG
CATTCGGGGGTCACAGACCGACCGTAGACCTGATTCAAAGAGTGGAACGCTTTGGCTGTCCACTTCCGTT
GGCAGGAAGGGTCGGAGAAGAGCAACTCTTCAGTGTTGGGACTAATCGTCTGTTGGTAAGAGTTGCTTTT
CGGAGAGCACAGTACGATGAAAGTTGTAGGCTGTGTTCGGGGGGGAGTTTTTGCTCATCGTTCGCCCCTA
TGATAGAATAGAGTCCCGAATTGATAGACAGTAGCTTACCCTAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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