The detailed information of tRNA gene sequence


Sequence ID>CHL1899200006
Genome IDKC117178
Search identical group
Phylum/ClassViridiplantae
SpeciesOphioglossum californicum (KC117178)
Start position on genome 102956
End posion on genome 103778
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
gcctgggcag
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGGAGCTTCGCTTTTGCATGGCGAAAGTCAGCGGTTCGAA
TCCGCTTGTCTCCAgcc
Downstream region at tRNA end position 
cgtgatccga
Secondary structure (Cloverleaf model)
>CHL1899200006	Cys	GCA
                   g      Agcc cgtgatccga
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T + G
                     A - T          T A
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A G        T     AAGTC
                    T - A
                    C - G
                    G - C
                    C - G
                    T + G
                  T       T
                  T       A *
                    T G C
intron: position=38, length=750 (in A-loop)
ATTGGGTCGTTGCGCTTACGGGTTGGATGCCTACTTGTCTAGGCGGCAACGATAGTAACTCTCACCCAAA
CCGGTGGCTAACTCTTCCTCATCAATGGGGGAAAGGACTGGAACATGCCACTGAAAAACTCTACTGAGAC
AAGCTGTCGGAAATGTAGAGAGGGTAGGATGGGTAGTTGGTTAGATCCAGTGCGGATCGTACATGGGCGA
TAGTTGGAGTCGGCGGCTCTTCCAGGATTACCTTATCCGGAATCCCTGGGGAAGAGGATCAAGTTGGCCC
TTGCAAACAGCTTGATGCACTATCTCTCTTCAACCCCTGAAGCACGATGCAGCAGAAGGAACGAGAAGCC
ATGGACCGACCCCATCCCTCCACCCCGTAGGAACTACGAGATCGCCCCAGGGATGCCGAAGGCACCCGGG
GTCACAGACCGACCGTATAACCTGATTTAAGGAGTGGAATGCATTAGCTGTCTGCTCTGGTTGGCAGAAA
GGGTCGGGGAAGGGCAACCACTCGTTGTTGGAACCGAAGGGTCGGGCGGAAAGGAGTTCCTAGCTATTGG
TTCCTCCGCACCGTAGCTCGGGAGTATCCAGCTGCAAGAATCCCAACTCGATGCCTTTCGAGAAGAGTTG
CTCTTCGGAGAGCACGGTACGATGAAAGTTGTAGGCTGTGTTCGGGGGGGAGTCATCGTCCATCGCCGGC
CCCTGCGGCAGAATCAGTCGGAGAGGCCTGAGAGGCGGTAGCTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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