The detailed information of tRNA gene sequence


Sequence ID>CHL1899200010
Genome IDKC536645
Search identical group
Phylum/ClassViridiplantae
SpeciesLygodium japonicum (KC536645)
Start position on genome 148796
End posion on genome 149651
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
ccgaagcaca
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGGAGCGCCGCCCTTGCATGGCGGATGCCAGCGGTTCGAG
TCCGCTTATCTCCAtcc
Downstream region at tRNA end position 
tgtgatccaa
Secondary structure (Cloverleaf model)
>CHL1899200010	Cys	GCA
                   a      Atcc tgtgatccaa
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A G        G     ATGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=783 (in A-loop)
AGTGGGTCGTTGCGCTTACGGGTTGGGCGCCTAATCATTTAGGCGGTGGTGATAGCATCTCCTACCAGAA
CCGGTGGCTAACTTTCTCCCCAGGAATGGGGGAGGGAGGACCAGAACATGCCACTGAAAGGCTCTATTGA
GACAAGTATGAGCTGTCAATAATGTAGGGGGAGTAGGATGGGTGGTCGGTTAGATCCGGTATGGGTCGTA
CATGGACACTGGTTGGAGTCGGCGGCTCTCCCGGATCTCGTAGGGATCCCCGGGGAAGAGAATCGAGCTG
GCCCTTGCGAACAGCTTGATGAACTATCTCTCTTCAACTACCTGAGCACGATGCGGCGGAAAGAAGATCC
ATGGACCGACCCCATCGACCCCACCCCGTAGGAACTACGAGATCGCCCCAGGGGATGCCAAAATCATCCG
GGGGTCACAGACCGACCATAAAACCTGATTCGAGGAGTAGAACGCGTTGGTGTCTGCTCCAGTTGGCGGT
AAGGGTCGGAGAAGGGCAACCACTCGCTCTTGAGGCAAAAGAGTCGATAGAAAAAGAAAAGGAAAGGCCA
AGAGCCTCTTCTGGTCTGGTTCCCCCACAGATCGGGAGTCTGAACTAGGGGAATGCCTAGCACGGGATCT
CCCTTTGGAGCCTTTTCATTCAGGGGGAGTTGCTCCTCGGAGAGCACGGTACAGTGAAAGTTGTAGGCCG
TGTTCGGGGGGAAGTCATCGCCTATTGTATGCCCCTGACGGAAGGATCCGTCAGGTAGGCCTGTAAGGCG
GCGGCTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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