The detailed information of tRNA gene sequence


Sequence ID>CHL1899100112
Genome IDAP012265
Search identical group
Phylum/ClassViridiplantae
SpeciesCephalotaxus wilsoniana (AP012265)
Start position on genome 128502
End posion on genome 125730
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
gtataagagC
tRNA gene sequence 
TAAGTTCTTGGATCGATGGAAAGATCCCAATCTTTGCAAGATTGAAAGGTCTTATTTCTA
AGAAAAACAGATTGTTCGATCCAATCGAATTATGGac
Downstream region at tRNA end position 
taatcaatgt
Secondary structure (Cloverleaf model)
>CHL1899100112	Ala	TGC
                   C      GGac taatcaatgt
                     T   T
                     A   A
                     A - T
                     G + T
                     T - A
                     T - A
                     C - G          C T
                    T     C T A A C     A
      A G C        T      | | | | |     G
    T       T A G G       G A T T G     C
    G       +   + |                 T T
    G       G A T C
      A A A        C     AAAGGTCTTATTTCTAAGAAAAACA
                    C - G
                    A - T
                    A - T
                    T - A
                    C - G
                  T       A *
                  T       A
                    T G C
intron: position=39, length=2677 (in A-loop)
ATTGACGGTAAATAGCAAGAAACTATCTTGCTAAATGAGAATAAGATAAAACTCTCACTCTCTAAAAAGT
TGTATTAACTTGTAATTATTATTACACTAATATTGTATTATTAAAAACTATAGGATAAAAAAACTATGGA
AAAACAAAAAATTGAAGCTATTGAATATATTGAATATGTTGAGGATATTGAAGAACAAAAAATTATTGAA
GAAAAAAAAAAAAGAATATTTTCTTTAGCAAAAAGTATAAAACAAAAAAAAGAAAACCGAGGAATGTTAT
GGTTACGTAGCGTTAAGTCGAGATTTAAAGTGAACATGATGGTAGTATTCAGTCCATGGAACGAATCCAA
TTTGGTGAGATTCTTAACTCAAATATTTTCTGGTCGAGAAAGTGTTATTAAGCTCTTTGACTTTAGGATT
ATTAGTACCTTACTTATACGTGATCTACGTATATTTATTAAAACGCGTCAAATAAGAAAAGCTTTAATAG
TACTTACATTACCATTATTGATATATTATTTATATAGTCGACCTTTGGTCGAAAGAGATAGATCAAAATC
TGATTTGACTAAGATATTTCCACACAATTTTAGATTTATAAAGAAAAATTTGTTGCTCTTTCCGCATATG
TTGATGTGTTTGCCAAAATGCAAAAGAAGATATCAACGTCGCTTGCTCAATCCAAAAGAGCATGTTTGGG
TTTTCTCAAGGTCCGACACAAATCTGAATTATAAAAATGATATAATCTCAGATAACCAAGGCCCAATAAG
TTGGGGAAGTCATTCGGAGAATGAATCGAAAGATATTGAATGGCAGATTGATTCAACTTTCAATTCGAAT
CAAAATGAGTATGGAGAACCTGATGATTCACTTTGTGAATGGATTAGAACAAACGAATCTAAAAACGGAA
TCAAGCAACTAGAAGAAAAATCAGTTCGAACAGGAGAATTTGATTTTTCTTCAAGACCAGAAGATTATAG
CAATGAAGAAATCGAACAAGAAGAAATCAACGAAAATGAAGATTTCGAACAAGGAGATTTCGAACAAGAA
AAATCAGTTCGAATAGGAAATTATAGAAATGAAGAAATCGAACAAGAAGAAATCAACGAAAATGAAGATT
TCGAACAAGAAAAATCAGTTCGAATAGGAAATTATAGAAATGAAGAAATCGAACAAGAAAAATCAGTTCG
AACACGAAAATTGCTAAAACGTCCTAGTCGAAAGCTTTTCAAATTGATTAATATACCCCAAATTGAAGAA
ATCGAAAAATACCAAGAAGAATTAGAAAAACAACGAGAAGAAATCGAACAAGAAGAAATCGAACAAAAAG
AAATCGAACAAGAAGAAATCGAACAAGAAGAAATCAACGAAAATGAAGAAATCGAACAAGAAGAATCAGT
TCGAACAAGAGAATCTCATTCGTTCTCAGAGTCAAAATTTTTAGAAGAATTGCTTTCTAATTTGTCAATA
GATGAATCATGTATAAGCGTTAGTGCTACTGATAAACCCATCGAATTTTTGAAAAGTCGAAAAGATGCTT
TTCAATATTTCAGGGAATCAGAAAGGAATAGGATAGTTGATCTATGGAAGATCAAAACATATCTTCAAAA
TCCTTCTGCAAACTATGATATTTCATCAGATCCCGGATGGAATATTAGAAGAGATATAAACCAATTAAAT
TGTATTCGATTTGTGAACCAGAATTTACCTTCGATATCTTTTTCATCCTGTGATCAGAACAAAGAACAAT
TAACGTTAAACAGCGATTTTTACAGGCAATTGAAGAGAATTGTTCTGAAAATAACGGATCAATTCACTCT
ATCAATAACTAATCCTAATCTAGGATACCAAAAAGGAGTTTTAGTTTTGGATAATGAAATTTCCCTGGAT
ATGGATTATCACATGAATCAATTTTATGAACTGAACAATAATATATTATTATTATTGAATCAAATCTTAA
ACTACAGAGATAAATTAAAACATCATTTTTTCTTTGTGCTATTCAATATTATTGATAAAGAGAATCTGAT
TCGATATGTAGATCGAATAATATCAAAGAATGATAGAACCGAAACTTCGGTACGACTAATATTTAACCAA
TATAAGATTCAAGTTGACGAGCATCTTGAAAAAACATTCAAGAGATTCTATTTGTTGAAGAATGCATTGA
TGAAATACTCTTTATCAAAATTATCATCTTTATCAAAATTACCAAAAGTATTTAAAGAGTACTTAGAGTA
CTCATTAGGATTGGATCCTGTATTGGACGCTTTTTTATTGGATACTACACTGGATGATATAGAATCCGAT
ACTTCATTTGATGACTATGCTTTTTCAATATCGTTCCACGATCAAGATTTGGATTTGCGATGGAAAAAAA
TATGTCTCTATCTTAAATTGAAAAAAAAAGTTAATAAATACTATTTGGAATTGACAAAAGTATTTAATAG
AATCTCTAAAAAGTTTAGTTACAATTTAAAAGATAAAATTCGAACAAATTTGATAAGAAAAGACGTTTTG
AATAATGTAACGCAAGATGCAATTAACCGGTATTCATCAAGTTGGAGAAAATATCACAAAGAATGGTTCA
ATTACTTTATTGTTGAAATTTACCAAAATATGAATGCATCGTCCATTCTGATCGAATACTTTTCTTTGAA
AAAAGAATTGAAAAAAG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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