The detailed information of tRNA gene sequence


Sequence ID>CHL1899112022
Genome IDLC192954
Search identical group
Phylum/ClassViridiplantae
SpeciesDendrobium brymerianum (LC192954)
Start position on genome 47185
End posion on genome 48070
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
caaaggaaag
tRNA gene sequence 
GGGGATATGGCGAAATTGGTAGACGCTACGGACTTGATTGATCCGTCGAATTTTTAAATT
CGTGAGGGTTCAAGTCCCTCTATCCCCAata
Downstream region at tRNA end position 
aaaagcccat
Secondary structure (Cloverleaf model)
>CHL1899112022	Ile	GAT
                   g      Aata aaaagcccat
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
    T T A A        G      | | | | |     A
  G         A G C G       G A G G G     C
  G               +                 T T
  T         C G C T
    A G A          A     TCGAATTTTTAAATTCGT
                    C - G
                    G - C
                    G - C
                    A - T
                    C   A
                  T       G *
                  T       T
                    G A T
intron: position=39, length=798 (in A-loop)
GATTGAGCCTTGGTATGGAAACCTGCTAAGTGGTAACTTCCAAATTCAGAGAAACCCTGGAACTAAAAAT
GGGCAATCCTGAGCCAAATCTTTTTTTTTGAGAGAAAAAATGATGGAAAATGAGAATAAAAAGGGATAGG
TGCAGAGACTCAATGGAAGCTGTTCTAACGAATGAAATTGACTACGTTACGTTAGTAGCTAAAAACCTTC
TATCGAAATGACAGAAAGGATAACCTTATATGCGCCTAATACGTACGTATACATACTGACATAGCAAACG
ATTAATCACAACCCAAATCTGATATTGAATTCTATTCTGTATCTCTATATATGAAAAATATGAAAATCTA
AATCTTATCTTATATAGAGAATATATATTCTATTATCTTAAGAATAAGAATTAGATTAAGAATCTATATA
TTTCTTCATTCTATTATTCTAATTATTCTAGAATCTAATAATAGAATACTATTTCTATATTCTTTATTTC
TTTCTTATTTATATTACTCTTAATATTACTCTTAATATGAGTAATAGTATGAGATAAGGACCTATAGAAA
ACCTCTATTAATTAGAATCATAGAGATCAAAAAATCTATGAAAAATTGAAGAGTTATTGTGAATCAATTC
CAATTGAAGTTTTGAAGTTGAAAAAAGAATCGAATTCAAATATTCAGTGATAAAATGATTCATTCCAGAG
TTTGATAGATCTTTTGAAGATTAATCGGACGAGAATAAAGAGAGAGTCCCATTTTACATGTCAATACCGA
CAACAATGAAATTTATAGTAATAGGAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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