The detailed information of tRNA gene sequence


Sequence ID>CHL1899114495
Genome IDMG385662
Search identical group
Phylum/ClassViridiplantae
SpeciesCephalotaxus sinensis (MG385662)
Start position on genome 110326
End posion on genome 109478
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cccgattatg
tRNA gene sequence 
GGTTATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCAGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAtta
Downstream region at tRNA end position 
tctttaatgc
Secondary structure (Cloverleaf model)
>CHL1899114495	Ala	TGC
                   g      Atta tctttaatgc
                     G - C
                     G - C
                     T   T
                     T   C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C   A
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=776 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTGATTATCTAAGTGGTAATGATAGTATTTTTTACCTGAA
CCGGTGGCTCACTTTTTTTCAGTAATGGGTAAAAGGACCTCAACATGCCACTCAAAAACTCTATTGAGTC
GAAGATAGACTGTCAAGAACCTAGAGAAGGTAGGGTGGGTAGTTGGTTAGATCTAGTATGGATCGTACGT
GGCCGACAGTTGGAGTCAGCGGCTCTCCGAAGATCTTTCATATAGGATCTCCGGGGAAGAGGATCAAGTT
GGCCTTTGCAAACAGGTTGATGTACTATCTCCCTTCAACCCTTTCTGACAAAATGTCTCAGAAGAAAAAG
CCATGAGCCGACCCTATCGTCTCCACCCCGTAGGAACTACGAGATCGCCCCAAGGATGGCTGAAAGCATC
CAGGGGTCACAGACCATATATCCTGCGTTCGAGAAGTGGAACGCATTAGCTTTTCCTTCCTGTCCAACAG
GAAGGGTCGGAGAAGGGCAATTTTAATTTTTTTTAAGACTAAAGAGTTGGGTGGAAAAAAGGAGAGCTCT
TTGTTCTTGGTTATTCTGGAGTTGGAAGTTCCAGAACGAATCCCTGTAATGGGGATTACAACCCAACTCC
TTTTGGGAGGAATTGCTTTGCTCTTTGGAGAGCACAGTACGATGAAAATCGTTAGCTGTATTCGGGAGGT
AAACTATTGTCGATTGTTGGCCTATATGATAGAATCCAATTTATCGGGGGGGCCAATTAGATAGTGATTG
ACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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