The detailed information of tRNA gene sequence


Sequence ID>CHL1899114848
Genome IDMG599082
Search identical group
Phylum/ClassViridiplantae
SpeciesCrudia harmsiana (MG599082)
Start position on genome 105536
End posion on genome 106557
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cctgtacgac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCACCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaagga
Secondary structure (Cloverleaf model)
>CHL1899114848	Ile	GAT
                   c      Agct gcgccaagga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    A   C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=950 (in A-loop)
ATTGTGTCGTTGTGCCTAGGTTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCGGCGCCT
GACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTTCTCCTGTTCGAACGGGGGTTTGAA
ACCAAACTTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATT
CACTCGTGGGATTCGGGCGGTCCAGGGGAGGACCACCATGGAGGTCGATCCATACATCCCTTATCAGTAT
ATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGAAAAATAAAAACGGAGCACCTAAC
AACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTACATTCTGGGGTGACGGCGGGATCGTACC
ATTCGAGCCTTTTTTTCATACTTTTCCCGGGGGTCTGGAGAAAATTGCAATCAATAGGATTTTCCTAATC
CTCCCTTCCCGAAAGGGAGAACGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGATTGGATCTAGCC
ATAAGAAGAATAGAATGCTTGGCTGATAAATAACTCACTTCTTGGTCTTCGACCCCCTCAGTCACTACGA
ACGCCCCCGATCAGTGCAATGGGATGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGGTTTGA
AAAAGGATCTTAGAGTGTCTAAGGTTGGGCCAGGAGGGTCTGGTCTCTTAACGCCTTCTTTTTTCTTCTC
ATCGGAGTTATTTCACAAAGACTTGCCATGGTAAGGAAGAAGGGGGGGAACAAGCACACTTGGAGAGCGC
AGTACAACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCTATTGATTCT
TTCCCAATTGGTTGGACTGTAGGTGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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