The detailed information of tRNA gene sequence


Sequence ID>CHL1899115125
Genome IDMG882489
Search identical group
Phylum/ClassViridiplantae
SpeciesPisum sativum subsp. elatius (MG882489)
Start position on genome 46837
End posion on genome 45955
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAact
Downstream region at tRNA end position 
cgttcatttt
Secondary structure (Cloverleaf model)
>CHL1899115125	Ala	TGC
                   g      Aact cgttcatttt
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=810 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATGGGAAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAGATGGGCTGTCCGTAGAGGAGGTAGGATGGGAAGTTGGTCAGATCTAGTATGGATCATACATGGACG
GTAGTTAGAGTCGGTGGCTCTCCTAGGGTTTCCTCATCTGAAATCCTGGGGAAGAGGATCAAGCTGGCCC
TTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGGAAAACAAAACAAAAGGA
AAGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTT
TGGCATCCAGGGGTCGCGGACCGACCATAGAACCCTGTTCAACCTGAAAACGCCTTAGTTCTCCGTATCT
TAGGTTGAACAGTTAAGGGTCGGAGAAGTGCAATTACTCATTCTTAACTTCAAACCTACATTCTTAAGAG
CAAAGAGTCGGGCGGATAAAGGGGGGGAGAAGCTTTTCGTTCTCGGTTCTCCTGTAGCTGGATCTTCCGC
AACCACAAGAATCCTTGTTTGAATGGGATTCCAACTCAGCACCCTTTGATATTTTGAGAAGAGTTGCTCT
TTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGAGGGTTATTGTCTATCGTTGGCCTCTATG
GTAGAATCAGTTGGGGCTTGAGAGGCGGTGATTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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