The detailed information of tRNA gene sequence


Sequence ID>CHL1899100032
Genome IDAB601120
Search identical group
Phylum/ClassViridiplantae
SpeciesPseudotsuga sinensis var. wilsoniana (AB601120)
Start position on genome 87653
End posion on genome 88709
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
gcctgtagaT
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATAGCCCAGCt
Downstream region at tRNA end position 
gcaccgggga
Secondary structure (Cloverleaf model)
>CHL1899100032	Ile	GAT
                   T      AGCt gcaccgggga
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=982 (in A-loop)
ATCGCGTCGTTGTGCCTGGGCTGTGAAGGCTCTCAGTCACATGGATAGTTCAATGTGCTCATCAGCGCCT
GACCCGGAGATGTGGATCATCCAAGGCACAGTAGCATGGCGTACTCTTCCTGTTTGTTCGAACCGGGGTT
TGGAACTGAACTTATCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCAAATGCAAATCCAACTTTC
TATTCATTTGTGGATCTGGGCGATCCGGGGGGGCCAGTGGTTATCCACCATGGATCCTCTCTTCTCGAGA
ATCCATACATCCCTTATCAGTGTATGGATGGCTATCTCTCGGGGACAGGTTGAAGTTCAGCCTAGATGTG
GAAAATGGAGCACCTAACAACGCATCTTCACAGACCAAGAACTACGGGATCACCCTTTTCATTCTAGGTA
GGGTGACGGAGGGATCGTACCATTCGAGCCTTTTCATGCTTTTCCTGGAGGTCCGTAGGAAGCAGCAATC
GATAGGATTTGATCATTATTCTCTAAGGGAATAACGTGAAATTAATTCTATCAATTTCTTTTCCGTAGGA
CCCAGTAGAGTAGATTGGATCTAGTCATAAGAATAGAAGAATGCTTGGTGTAAATAAAAATAACTCCTTG
GTCTTCGACCCCCCACTACGAACAGCCCTTGGATCAGTGCAATGGGATGTCTTTATCCATCTCCTAACGA
TGGGAGCAGAGCAGGTTCGAAAAAGGATCTTGGAGTGTCCCGGGGTTGGGCCAGGAGGGTCTTTCAACGC
CTCCTTTTCTCATCAAAAGTGATTTCCACTTGCTCGCCGTTGGCGAAATAAAAAGAAAAGGAAGGGGAAC
AAACACACTTGGAGAGCGCAGTACAACGGAGAGCAAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTC
CTGAAAAAGAATCTATTGATTCTCTTCCAATTAGTTGATTGGATAGTATTGCAGGTGCGAGGATTTACTT
CA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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