The detailed information of tRNA gene sequence


Sequence ID>CHL1899100033
Genome IDAB601120
Search identical group
Phylum/ClassViridiplantae
SpeciesPseudotsuga sinensis var. wilsoniana (AB601120)
Start position on genome 88787
End posion on genome 89634
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cccgggtacg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAgcc
Downstream region at tRNA end position 
cgtgatccta
Secondary structure (Cloverleaf model)
>CHL1899100033	Ala	TGC
                   g      Agcc cgtgatccta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=775 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTGATCGTCTAGGCGGTAATGATAGTATCTTTTACCCGAA
CCGGTGGCTTACTTTTTCTCAGTAATGGGGAATAGGACCGAAACATGCCACTGAAAAACTCTACAGAGAC
AAAGATAGGCTGTCAAGAACGTAGAGAAGGTAGAGTGGGTAGTTGGTTAGATCTAGTATGGATCGTACAT
GGGCGATAGTTGGAGTCGGCGGCTCTCCTAGGGTTACCTCATCGGGGATCCCTGGGGAAGAGGATCAAGT
TGGCCCTTGCGAACAGCTTGATGTACTATCTCCCTTCAACCCTTCGAGCAAAATGTGGTAAAAGGAAAAG
CCATGCCATGGACCGACCCCATTGTCTCCACCCCGTAGGAACTACGAGATCGCCCCAAGGATGCCGAAGG
CATCCAGGGGTCACAGACCGACCATATACCCACCCTGATTCGAGGAGTGGAACGCATTAGCTGTCCGCTC
CGGTTGGACAGGAAGGGTCGGAGAAGGGCAATCATTCTTAGGACCAAAGAGTCGGGCGGAAAAAGGGGAT
AGCTCCCCGTTCCTGGTTCTCTTGTAGCTGGATAGTCCAGAACTACAAGAATCCCCGAAATGGAATTGAA
ACTCAGCACCTTTTGGGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTGAGCTGTGTTCGG
GGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGTCGGGGAGGCCTGAGAGACGGTGGTTTA
CCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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