The detailed information of tRNA gene sequence


Sequence ID>CHL1899100174
Genome IDAY916449
Search identical group
Phylum/ClassViridiplantae
SpeciesPhalaenopsis aphrodite subsp. formosana (AY916449)
Start position on genome 128883
End posion on genome 128009
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
acccggctcg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAgcc
Downstream region at tRNA end position 
cgtgaactta
Secondary structure (Cloverleaf model)
>CHL1899100174	Ala	TGC
                   g      Agcc cgtgaactta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=802 (in A-loop)
ATTGGGTCGTTGCAATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGGAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTAC
ATGGACGATAGTTGGAGTCGGCGGCTCTCCTAGGGTTCCCTCATCTGGGATCCCTAGGAAAGAGGATCAA
GTTGGCCCTTGCGAATAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCAAAATGTGGCAAAAGGAAG
GAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGAAACTGCGAGATCGCCCCAAGGACGCCTTCG
GCATCCAGGGGTCACGGACCGACCATAGACCCTGTTCAATAAGTGGAAGGCATTAGCTGTCCGCTCTCCG
GTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCGTTCTTAAAACCAGCATTCTGAAGACCAAAGAGTC
GGGCGGAAAAGGGAGGGAGAGCTCTTTGTTCCTGGTTCTCCTGTAGCTGGATTCTCCGGAACCACAAGAA
TCCTTAGAATGGTATTCCAACTCAGCACCCTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGT
ACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGC
CGGAGAGGCCTGAGAGGCGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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