The detailed information of tRNA gene sequence


Sequence ID>CHL1899100175
Genome IDAY916449
Search identical group
Phylum/ClassViridiplantae
SpeciesPhalaenopsis aphrodite subsp. formosana (AY916449)
Start position on genome 129962
End posion on genome 128947
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccacacgac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaggga
Secondary structure (Cloverleaf model)
>CHL1899100175	Ile	GAT
                   c      Agct gcgccaggga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=944 (in A-loop)
ATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCTACATGGATAGTTCAATGTGCTCATCGGCGCCT
GACCCGGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTCGAATCGGAGTTTGAA
ACCAAACTTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGACCCAATGGAGATCGAACTTTCTATT
CACTCGTGGGATCCGGGCGGTCCGGGGGGGCCCCCACGGCTCCTCTCTTCTCGAGAATCCATACACCCCT
TATCAGTGTATGGACAGCTATCTCTCGAGCACAGGTTGAGGTTCGGCCTCAATGAGAAAATGGAGCACCT
AACAACGCATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACAGAGGGATCATA
CCATTCGAGCCTTTTTTTCATGCCGGAGGTCTGAAGAAAGCAGCAATCAATAGGATTTTCCGAATCCTCC
CTTCCCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGATTGGATCTAGCCATAA
CATAAGAAGAATGCTTGGTATAAATAACTCACTTCTTGGTTTTCGACCCCCTCAGTCACTACGAGCGCTC
CTCGATCAGTGCAATGGGATGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAGGAGCGAGCAGGTTT
GAAAAAGGATCTTAGAGTGTCTAGGGTTGGCCAGAAGGGTCTCTTAACGCTTTCTTTTTTCTTCCCATCG
GATTGATTTCACAAAGACTTGCCATGGTAAGGGAGAAGGGGGAACAAGCACACTTGAAGAGCGCAGTACA
ATGAAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAAGAATATATTGATTCTCTCCCA
ATTGGTTGGATCGTAGGTGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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