The detailed information of tRNA gene sequence


Sequence ID>CHL1899100181
Genome IDDQ231548
Search identical group
Phylum/ClassViridiplantae
SpeciesBrassica rapa subsp. pekinensis (DQ231548)
Start position on genome 102742
End posion on genome 103614
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAact
Downstream region at tRNA end position 
cgtgaactta
Secondary structure (Cloverleaf model)
>CHL1899100181	Ala	TGC
                   g      Aact cgtgaactta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=800 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGGTGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATGGGGAAAAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGTCAGTTGGTCAGATCTAGTATGGATCGTACAT
GGACGGTAGTTGGAGTCGGCGGCTCTCCTAGGGTTCCCTCGTCTGGGATTGATCCCTGGGGAAGAGGATC
AAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGA
AGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTT
CGGTATCCAGGGGTCGCGGACCGACCATAGAACCCTGTTCAATAAGTGGAATGCATTAGCTGTCCGCTCG
CAGGTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCATTCGAAAGAGTTGGGG
CGGAAAAGGGGGGAAAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGATCCTCTCGAACCACAAGAATCCT
GAGTTGGAATGGGATTCCAACTCATCACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGT
ACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTCTTGTCTATCGTTGGCCTCTATGGTAGAATCAGT
CAGGGGCCTGATAGGCGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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