The detailed information of tRNA gene sequence


Sequence ID>CHL1899100239
Genome IDEU254477
Search identical group
Phylum/ClassViridiplantae
SpeciesFagopyrum esculentum subsp. ancestrale (EU254477)
Start position on genome 140629
End posion on genome 139747
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cctggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCACtc
Downstream region at tRNA end position 
gtgaacttag
Secondary structure (Cloverleaf model)
>CHL1899100239	Ala	TGC
                   g      ACtc gtgaacttag
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=809 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACCGAAAGACTCTACTGAGAC
AAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTACAT
GGACCGTAGTTGGAGTCAGCGGCTCTCCTAGGGTTCCTTAATCTGGGATCCCTGGGGAAGAGGATCAAGT
TGGCCCTTGCGAACAGCCTGATGCACTATCTCCCTTCAACCCTTTGGGCGAAATGCGGCAAAAGGAAGGA
AAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTTGGC
ATCCAGGGGTCACGGGCCGACCATAGAACCCTGTTCAAGTTCAATAAGTGGAACGCATTAGCTGTCCGCT
CTCCGGTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCTGCATTCTTAAGACCAAA
GAGTTGGGCGGAAAGGGGGGGAAAGCTCTCTGTTCCTGGTTCTCCTGTAGCTGGATCCTCCGGAACCGCA
AGAATCCTTAGTTCGAATTGGATTCCAACTCAGCACCTTTTGCGATTTTGAGAATAGTTGCTCTTTGGAG
AGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTCAGCCTCTATGGTA
GAATCAGTCGAGGGACCTGAGAGACGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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