The detailed information of tRNA gene sequence


Sequence ID>CHL1899100429
Genome IDFN998900
Search identical group
Phylum/ClassViridiplantae
SpeciesOlea europaea subsp. maroccana (FN998900)
Start position on genome 105537
End posion on genome 106420
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCACGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAact
Downstream region at tRNA end position 
catgaactta
Secondary structure (Cloverleaf model)
>CHL1899100429	Ala	TGC
                   g      Aact catgaactta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       C
                  T       A *
                    T G C
intron: position=38, length=811 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCATACAT
GGACGGTAGTTGGAGTCGGCGGCTCTCCCAGGGGTCCCTCATCTGAGATCCCTGGGGAAGAGGATCAAGT
TGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGAAAAGG
AAGGAAAATCCATGGACCGACCCCATCATCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGGCGCCT
TTGGCATCCAGGGGTCACGGACCGACCATAGAACCCTGTTCAATAAGTGGAACGCATTAGCTGTCTGTTC
TCAGGTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCGTTCTTAAGACCAAAG
AGTCGGGCGGAAAGGGGGGAAAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGAACCTCCGGAACCACAAG
AATCCTTAGTTAGAATGGGATTCCAACTCAGCACCTTTTGAGTGAGATTTTGAGAAGAGTTGCTCTTTGG
AGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTCGGCCTCTATGG
TAGAATCAGTCGGGGGGCCTGAGAGGCGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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