The detailed information of tRNA gene sequence


Sequence ID>CHL1899100437
Genome IDFN998901
Search identical group
Phylum/ClassViridiplantae
SpeciesOlea woodiana subsp. woodiana (FN998901)
Start position on genome 105610
End posion on genome 106493
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCACGGCGGATGTCAGCGGTTCAAGT
CCGCTTATCTCCAact
Downstream region at tRNA end position 
catgaactta
Secondary structure (Cloverleaf model)
>CHL1899100437	Ala	TGC
                   g      Aact catgaactta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     A
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       C
                  T       A *
                    T G C
intron: position=38, length=811 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCATACAT
GGACGGTAGTTGGAGTCGGCGGCTCTCCCAGGGGTCCCTCATCTGAGATCCCTGGGGAAGAGGATCAAGT
TGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGAAAAGG
AAGGAAAATCCATGGACCGACCCCATCATCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGGCGCCT
TTGGCATCCAGGGGTCACGGACCGACCATAGAACCCTGTTCAATAAGTGGAACGCATTAGCTGTCTGTTC
TCAGGTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCGTTCTTAAGACCAAAG
AGTCGGGCGGAAAGGGGGGAAAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGAACCTCCGGAACCACAAG
AATCCTTAGTTAGAATGGGATTCCAACTCAGCACCTTTTGAGTGAGATTTTGAGAAGAGTTGCTCTTTGG
AGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTCGGCCTCTATGG
TAGAATCAGTCGGGGGGCCTGAGAGGCGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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