The detailed information of tRNA gene sequence


Sequence ID>CHL1899100445
Genome IDGQ324949
Search identical group
Phylum/ClassViridiplantae
SpeciesOncidium hybrid cultivar (GQ324949)
Start position on genome 102269
End posion on genome 103135
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
ctcggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAgct
Downstream region at tRNA end position 
cgtgaactta
Secondary structure (Cloverleaf model)
>CHL1899100445	Ala	TGC
                   g      Agct cgtgaactta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=794 (in A-loop)
TTGGGGTCGTTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGA
ACCGGTGGCTCACTTTTTCTAAGGAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGA
CAAAAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTA
CATGGACGATAGTTGGAGTCGGCGGCTCTCCTAGGGTTCCCTCATCTGGGATCCCTAGGAAAGAGGATCA
AGTTGGCCCTTGCGAATAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGTGGCAAAAGGAA
GGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGAAACTGCGAGATCGCCCCAAGGACGCCTTC
GGCATCCAGGGGTCACGGACCGACCATAGACCCTGTTCAATAAGTGGAAGGCATTAGCTGTCCGCTCTCC
GGTTGGGCAGTAAGGGTCGGAGAAGGACAATCACTCGTTCTTAAAACCAGCATTCTGAAGACCAAAGAGT
CGGGCGGAAAAGGGGGGAGAGCTCTTTGTTCCTGGTTCTCCTGTAGCTGGATTCTCCGGAACCACAAGAA
TCCTTAGAATGGTATTCCAACTCAGCACCCTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACAATGAA
AGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGCCGGAGAGG
CCTGAGAGACGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK