The detailed information of tRNA gene sequence


Sequence ID>CHL1899100447
Genome IDGQ324949
Search identical group
Phylum/ClassViridiplantae
SpeciesOncidium hybrid cultivar (GQ324949)
Start position on genome 127627
End posion on genome 126605
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccagggagg
tRNA gene sequence 
CGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaggga
Secondary structure (Cloverleaf model)
>CHL1899100447	Ile	GAT
                   g      Agct gcgccaggga
                     C   C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=951 (in A-loop)
ATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCTACATGGATAGTTCAGCTAATAGCCATGTGCTC
ATCGGCGCCTGACCCGGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTCGAATC
GGAGTTTGAAACCAAACTTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGGAGATCGA
ACTTTCTATTCACTCGTGGGATCCGGGCGGTCCGGGGGGGACCCCACGGCTCCTCTCTTCTCGAGAATCC
ATACATCCCTTATCAGTGTATGGACAGCTATCTCTCGAGCACAGGTTGAGGTTCGGCCTCAATGAGAAAA
TGGAGCACCTAACAACGCATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGG
AGGGATCGTACCATTCGAGCCTTTTTTTCATGCCGGAGGTCTGAAGAAAGCAGCAATCAATAGGATTTCC
CGAATCCTCCCTTCCCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGATTGGAT
CTAGCCATAACATAAGAAGAATGCTTGGTATAAATAACTCACTTCTTGGTTTTCGACCCCCTCAGTCACT
ACGAGCGCTCCCCGATCAGTGCAATGGGATGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAGGAGC
AGGTTTGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGTTCTCTTAACGCTTTCTTTTTTCTT
CCCATCGGAGTAATTTCACAAAGACTTGCCATGGTAAGGGAGAAGGGGGAACAAGCACACTTGAAGAGCG
CAGTACAATGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAAGAATCTATTGATTC
TCTCCCAATTGGTTGGATCGTAGGTGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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