The detailed information of tRNA gene sequence


Sequence ID>CHL1899100653
Genome IDHM535629
Search identical group
Phylum/ClassViridiplantae
SpeciesPteridium aquilinum subsp. aquilinum (HM535629)
Start position on genome 93004
End posion on genome 91916
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cctgcataaT
tRNA gene sequence 
GGGCTATTAGCTCAGCGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGCC
CAGGATGGCCCAGtt
Downstream region at tRNA end position 
gcgccgaggg
Secondary structure (Cloverleaf model)
>CHL1899100653	Ile	GAT
                   T      AGtt gcgccgaggg
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          C G
                    T     G G A C C     A
        G A        A      + | | | |     A
      C     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=1015 (in A-loop)
ATTGCGCCGTTGCGCCTGGACTGTGGAAACTTTTATACACACGGGTAGTTAAATGTGACCATCGGCGCCT
GACCCGAAGATGTGTCTAATCCAAGGGACGTTAGCTTGGCGTACTCTCTCCATTTTGACTAGCTCGGGTC
TCAGAATCGGGCTACTCTTCAGGAGGAGATAGATGAGGCAACTCAGGTGAGATCTAATGAGGATTCAACC
TCCGAATCACTCGTGGGATTCGGGCGATCCGGGGAGGACCAGTCATCGCTAGCAGATCCTCCTTTCTCGG
GAATCTATACATTCCTTATCAGTGTATAGATGGCTATCTCTCGAGCACAAACCGATGAACATCGGGCCAG
ATGTGAAAGACGGAGCACCTGATGACGCATATCCACAAACCAGGAACTACGGGATCACCCTCATTATTCT
AGGGTAGCGGAGGGATCACACTATACGAGCCTTTCCTGCTTCTCTTGGAGGTTCATAGAAGCAGCAATCG
ATGGAACTTACATACACGTGCGGGTAGGGTTCGAAGTCCCAGAAATTCGAGGTTTTCTCCTATCCGGAGA
AGCGGGAATACTGGACCCAGACATGAAAAAAATGTCGGAGGGAAAAAAAAGAGAAATCCCCGGTATTTGC
CCCAGCCCACTAGTTGGCTATTCCAAATAGCTTCCAATTCTATGTACCGAGATGCCTCGGTCCTCCCTTC
CCCAACGTAGGTAGGGGGAACAGGCTCGAAGAAAGATCCTAGAGTGTACGGGGTTAAGTTAAGCAAAGAG
GGTTTCTCGACGCCTCCTTCTCCCTTCCATCGATCAAATGAAGTATAAAGTATATTTCCGCGAAGTCCTT
GCCCCTAACAAGGCAAAAGGAAAAGATGGAACAAGCACACTTGGAGAGCGCAGTACAACAGGGAGTTGTA
TGCTGCGTTCGGGAAGGATGAGTCGCTTCTAAGAAAAGAAATCTATCAATTCTCCACTCTGATGAGATAC
TAATAAGAATAGTGTAGGTGCGATTATTCACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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