The detailed information of tRNA gene sequence


Sequence ID>CHL1899100655
Genome IDHM535629
Search identical group
Phylum/ClassViridiplantae
SpeciesPteridium aquilinum subsp. aquilinum (HM535629)
Start position on genome 144849
End posion on genome 145663
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cccgagcaca
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCGCCGCCCTTGCATGGCGGATGCCAGCGGTTCGAGT
CCGCTTATCTCCAacc
Downstream region at tRNA end position 
tgtgatccaa
Secondary structure (Cloverleaf model)
>CHL1899100655	Ala	TGC
                   a      Aacc tgtgatccaa
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     ATGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=742 (in A-loop)
AGTGGGTCGTTGCGCTTACGGGTTGGGTGCCTAATAGCTTAGGCGGTAGCGAGTGGTAGTATCTCCCACC
TGAACTGGTGGCTAACTTCTCCCCCAGGAATGCGGGAGGAGGACCAAAACATGCCACTGAGAGACTCTAC
TAAGACAAAGATGAGCTGTCGTGTAGGGCGGGGTAGGATGGGTTGTCGGTTAGATCCATTACGGATCGTA
CATGGGCGGTAGTTGGAGTCGGCGGCTCCCCCAGGGCTGCCTCATCTGGCGGATCCTTAGGGAAGAGAAT
CGAGCTGGCCCTTGCAAACAGCTTGATGGACTACCTCTCTTCAACTCTTTGGGCGCAATGTAGCAGAAGG
AATCGAGACACATGGACCGACCCCATCGCCCCCATCCCGTAGGAACTACGAGATCGCCCCAGGGAATCTT
TTTGACATCCGGGGGTCACAGACCGACCACATAACCAGATTCAAGAAGTCAAACGAGCTGTCTGTTTCCA
TTGGTGGGAAGGGTCGAGGAGGGACAGCTACTTGGTATCGAGACTGAAAGAGATTCGAGCAAGAGAGAGA
AGGGGAAAACAATCTTTGAAATAGGATTTTTCTTTGGCCTCTCCCAAATCGGGGGTAGTTGTTCCCTCGG
AGAGCACGGTACGATGAAAGTCGTAGGCCGTGTTCGGAGGGGAGTCATTGTCTATCGCCGACCTACCTGG
TAGAATCACTCAGGTAGGCCTGAGAGACGGTAGCTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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