The detailed information of tRNA gene sequence


Sequence ID>CHL1899100755
Genome IDHQ325742
Search identical group
Phylum/ClassViridiplantae
SpeciesGossypium herbaceum subsp. africanum (HQ325742)
Start position on genome 108527
End posion on genome 109396
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
acttggctcg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAact
Downstream region at tRNA end position 
cgtgaactta
Secondary structure (Cloverleaf model)
>CHL1899100755	Ala	TGC
                   g      Aact cgtgaactta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=797 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGGTGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAGATGGGCTGTCAAGAACGTAGAAGAGGTAGGATGGGCGGTTGGTCAGATCTAGTATGGATCGTACAT
GGACGGTAGTTGGAGTCGGCGGCTCCCCTAGGTTCCCCCATCTGGGATCCCTGGGGAAGAGGATCAAGTT
GGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAA
AATCCATGGACCAACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGTA
TCCAGGGGTCGCGGACCGACCATAGAACCCTGTTCAATAAGTGGAATGCATTAGCTGTCCGCTCTCAGGT
TGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCATTCTTAAGACCAAAGAGTCGG
AGGGGGGAAAGCTCTCCGCCGTTCCTGGTTTTCCTGTAGCAGGATCCTCCGGAACCACAAGAATCCTTAG
TTAGAATGGGATTCCAACTCAGCACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACG
ATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGTCGG
GGGCCTGAGAGGCGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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