The detailed information of tRNA gene sequence


Sequence ID>CHL1899100902
Genome IDJF343520
Search identical group
Phylum/ClassViridiplantae
SpeciesMankyua chejuensis (JF343520)
Start position on genome 110726
End posion on genome 111559
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
gcctgggcag
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTTCGCTTTTGCATGGCGAAAGTCAGCGGTTCGAAT
CCGCTTGTCTCCAgcc
Downstream region at tRNA end position 
tgtgatctga
Secondary structure (Cloverleaf model)
>CHL1899100902	Ala	TGC
                   g      Agcc tgtgatctga
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T + G
                     A - T          T A
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     AAGTC
                    T - A
                    C - G
                    G - C
                    C - G
                    T + G
                  T       T
                  T       A *
                    T G C
intron: position=38, length=761 (in A-loop)
ATTGGGTCGTTGCGCTTACGGGTTGGATGCCTAATTGTCTAGGAGGTAATGATAGTATCTCTTACCCAAA
CCGGTGGCTAACTCTTCCTCAGGAATGGGGAGAAGGACTGGAACATGCCACTGAAAAACTCTACTGAGAC
AAAGATGGGCTGTCGGAAGTGTAGAGAAGGTAGGATGGTTAGTTGGTTAGATCCAGTGCGGATCGTACAT
GGGCGATAGTTGGAGTCGGCGGCTCTTCCAGGGTTACCTTATCCGGAATCCCTGGGGAAGAGGATCAGGT
TGGCCCTTGCGAACAGCTTGATGCACTATCTCTCTTCAACCCCTAAAGCACGATGTGGCAGAAGGAACGA
GAAGCCATGGACCGACCCCATCCCCTCCACCCCGTAGGAACTACGAGATCGCCCCAGGGATGCCGAAGGC
ACCCGCGGGGGTCACAGACCGACCATAGAAACTGATTCAAGAAGTGGAATGCATTAGCTGTCTGCTCTGG
TTGGCAGTAAGGGTCGGAGAAGGGCAACCACTCATTGTTAAGACCGAAGGGTCGGGCGGAAAGGAGGAAT
AGTTCTTAGCTATTGGTTCTCCCGCAGCTCGGGAGGATCCAGCTGCAAGAATCCCAACTCGGTGCCTTTT
GAACAGAGTTGCTCTTCGGAGAGCACGGTACGATGAAAGTTGTAGGCTGTGTTCGGGGGGGAGTCATCGT
CCATCGCCGGCCTCTATGGCAGAATCAGTCAGAGAGGCCTGAGAGACGGTGGCTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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