The detailed information of tRNA gene sequence


Sequence ID>CHL1899100911
Genome IDJF345175
Search identical group
Phylum/ClassViridiplantae
SpeciesFragaria vesca subsp. vesca (JF345175)
Start position on genome 136427
End posion on genome 135544
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAact
Downstream region at tRNA end position 
cgcgaattta
Secondary structure (Cloverleaf model)
>CHL1899100911	Ala	TGC
                   g      Aact cgcgaattta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=811 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTACAT
GGACGGTAGTTGGAGTCGGCGGCTCTCCTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGT
TGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAAAA
AAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGC
ATCCAGGGGTCGCGGACCGACCATAGAACCCTGTTCAATAAGCGGACCGCATTAGCTGTCCGCTTTCAGG
TTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACTAGCATTCTTAAGACCAAAGAGTCG
GGTGTAAAAGGGGGGAAAGCTCTCCGTTCCTGGTTCTCCTGTAGCTAGATCCTCCGGAACCACAAGAATC
CTTAGTTAGAATGGGATTCCAACTCAGCACCTTTCCTTTTTTTTGAGATTTTGAGAAGAGTTGCTCTTTG
GAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATG
GTAGAATTAGTCGGGGGCCTGAGAGGCGGTAGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK