The detailed information of tRNA gene sequence


Sequence ID>CHL1899101069
Genome IDJN160603
Search identical group
Phylum/ClassViridiplantae
SpeciesSpirodela polyrhiza 7498 (JN160603)
Start position on genome 150116
End posion on genome 149241
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccgcacgac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgcg
Downstream region at tRNA end position 
gcgccaggga
Secondary structure (Cloverleaf model)
>CHL1899101069	Ile	GAT
                   c      Agcg gcgccaggga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=804 (in A-loop)
ATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGCGCCT
GACCCGGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTCGAATCGGAGTTTGAA
ACCAAACTTATCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATT
CACTCGTGGGATCCGGGCGGTCCGGGGGGGGACCAACAAGGCTCCTCTCTTCTCGAGAATCCATACATCC
CTTATCAGTGTATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATGGAGCAC
CTAACAACGCATCTTCACAGACCAAGAACTACGAGATCACCCCTTTCATTCTGGGGTGACGGAGGGATCG
TACCATTCGAGCCTTTTTTTCATGCTTTTCCCGAAGGTCTGGAGAAAGCAGCAATCAATAGGATTTCCCT
AATCCTTCCTTCCCGAAGGGAAGAACGTGAAATTCTTTTTATCTATCTCTTGACTCGAAATGGGAGCAGG
TTTGAAAAAGGATCTTAGAGTGTGCCAGGAAGGTTTCTTAACGTCTTCTTTTTTCTTCCCATCGGAGTTT
TTTCACAAAGACTTGCCATGGTAAGGGGGAAGGGTGGAACAAGCAAAGCACACTTGTAGAGCGCAGTACA
GCGGAGAGCTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCTGAAAAAGAATCTATTGATTCTCCCCCA
ATTGGTTGGATCGTAGGTGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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