The detailed information of tRNA gene sequence


Sequence ID>CHL1899101074
Genome IDJN160604
Search identical group
Phylum/ClassViridiplantae
SpeciesWolffiella lingulata 7289 (JN160604)
Start position on genome 110541
End posion on genome 111425
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccgcacgac
tRNA gene sequence 
GGGCTTTTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAATC
CAGGATGGCCCAgcg
Downstream region at tRNA end position 
gcgctaggga
Secondary structure (Cloverleaf model)
>CHL1899101074	Ile	GAT
                   c      Agcg gcgctaggga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     T   T
                     T - A          T A
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=813 (in A-loop)
ATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGCGCCT
GACCCGGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTCGAATCGGAGTTTGAA
ACCAAACTTATCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATT
CACTCGTGGGATCCGGGCGGTCCGGGGGGGGACCAACAAGGCTCCTCTCTTCTCGAGAATCCATACATCC
CTTATCAGTGTATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATGGAGCAC
CTAACAACGCATCTTCACAGACCAAGAACTACGAGATCACCCCTTTTTTTTCATTCTGGGGTGACGGAGG
GATCGTACCATTCGAGCCTTTTTTTCATGCTTTTCCTGAAGGTCTGGAGAAAGCAGCAATCAATAGGATT
TCCCTTCCTTCCCGAAGGGAAGAACGTGAAATTCTTTTTATCTATCTCTTGACTCGAAATGCGAGCAGGT
TTGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTTTCTTAACGTCTTCTTTTTTCTTCCCA
TCGGAGTTTTTTCACAAAGACTTGCCATGGTAAGGGGGAAGGGTGGAACAAGCAAAGCACACTTGTAGAG
CGCAGTACAGCGGAGAGCTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCTGAAAAAGAATCTATTGAT
TCTCCCCCAATTGTTTGGATGGTAGGTGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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