The detailed information of tRNA gene sequence


Sequence ID>CHL1899101076
Genome IDJN160604
Search identical group
Phylum/ClassViridiplantae
SpeciesWolffiella lingulata 7289 (JN160604)
Start position on genome 149863
End posion on genome 148990
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTTCGCCCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAgcc
Downstream region at tRNA end position 
cgtgaactta
Secondary structure (Cloverleaf model)
>CHL1899101076	Ala	TGC
                   g      Agcc cgtgaactta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    T + G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=801 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAA
CTGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAGATGGGCTGTCAAGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTACATGGAC
CTTAGTTGGAGTCGGCGGCTCTCCTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGC
ACTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGTGACAAAAGGAAGGAAAAT
CCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGCATCC
AGGGTCACGGACCGACCATAGACCCTGTTCAATAAGTGGAACGCATTATCTGTCCGTTCTCTGGTTGGGC
AGTAAGGGTCGGAGAAGGGCAATCACTCGTTCTTAAAACCAGCATTCTTAAAACCAAAGAGTCGGGCAGA
AAAAGGGGGAGAGTTCTCCGTTCCTGATTCTCCTGTAGCTGGATTCTCCGGAACCACAAGAATCCTTACC
TTAGAAAATGGGATTCCGACTCAGCACCTTTTGATATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTA
CGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATAGTAGAATCAGTC
GGGGAGGCCCGATAGGCGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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