The detailed information of tRNA gene sequence


Sequence ID>CHL1899101083
Genome IDJN160605
Search identical group
Phylum/ClassViridiplantae
SpeciesWolffia australiana 7733 (JN160605)
Start position on genome 111105
End posion on genome 111974
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAgcc
Downstream region at tRNA end position 
cgtgaactta
Secondary structure (Cloverleaf model)
>CHL1899101083	Ala	TGC
                   g      Agcc cgtgaactta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=797 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAA
CTGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTACAT
GGACCTTAGTTGGAGTCGGCGGCTCTCCTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGT
TGGCACTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGTGACAAAAGGAAGGA
AAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGC
ATCCAGGGGTCACGGACCGACCATAGAACCTGTTCAATAAGTGGAACGCATTATCTGTCCGTTCTCTGGT
TGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCGTTCTTAAAACCAGCATTCTTAAAACCAAAGAGTCGG
GCAGAAAAAGGGGGAGAGTTCTCCGTTCCTGATTCTCCTGTAGCTGGATTCTCCGGAACCACAAGAATCC
TTAATGGGATTCCGACTCAGCACCTTTTGATATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGAT
GAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATAGTAGAATCAGTCGGGG
AGGCCCGATAGGCGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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