The detailed information of tRNA gene sequence


Sequence ID>CHL1899101085
Genome IDJN160605
Search identical group
Phylum/ClassViridiplantae
SpeciesWolffia australiana 7733 (JN160605)
Start position on genome 150000
End posion on genome 149119
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccgcacgac
tRNA gene sequence 
GGGCTTTTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAATC
CAGGATGGCCCAgcg
Downstream region at tRNA end position 
gcgctaggga
Secondary structure (Cloverleaf model)
>CHL1899101085	Ile	GAT
                   c      Agcg gcgctaggga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     T   T
                     T - A          T A
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=810 (in A-loop)
ATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGCGCCT
GACCCGGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTCGAATCGGAGTTTGAA
ACCAAACTTATCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCTAACTTTCTATT
CACTCGTGGGATCCGGGCGGTCCGGGGGGGGACCAATAAGGCTCCTCTCTTCTCGAGAATCCATACATCC
CTTATCAGTGTATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTTGGCCTCAATGGGAAAATGGAGCAC
CTAACAACGCATCTTCACAGACCAAGAACTACGAGATCACCCCTTTTTTCATTCTGGGGTGACGGAGGGA
TCGTACCATTCGAGCCTTTTTTCATGCTTTTCCCGAAGGTCTGGAGAAAGCAGCAATCAATAGGATTTCC
CTTCCTTCCCAAAGGGAAGAACGTGAAATTCTTTTTATCTATCTCTTGACTCGAAATAGGAGCAGGTTTG
AAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTTTCTTAACGTCTTCTTTTTTCTTCCCATCG
GAGTTTTTTCACAAAGACTTGCCATGGTAAGGGGGAAGGGTGGAACAAGCAAAGCACACTTGTAGAGCGC
AGTACAGCGGAGAGCTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCTGAAAAAGAATCTATTGATTCT
CCCCCAATTGTTTGGATCGTAGGTGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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