The detailed information of tRNA gene sequence


Sequence ID>CHL1899101587
Genome IDKC128846
Search identical group
Phylum/ClassViridiplantae
SpeciesCistanche deserticola (KC128846)
Start position on genome 15604
End posion on genome 16617
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
ctcgcacgac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaggga
Secondary structure (Cloverleaf model)
>CHL1899101587	Ile	GAT
                   c      Agct gcgccaggga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=942 (in A-loop)
ATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCGGCGCCT
GACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTCGAGCCGGGGGTCTGA
AATAAAACCTCTCCTCAGGAGGATAGATGGGGCGATTCGGGTGAGATCCAATGTAGATCCAACTTTCGAT
TTACTCGTGGGATCCGGGCGGTCCGGGGGGGACCACCACAGCTCCTCTCTTCTCGAGAATCCATACATCC
CTTATCAGTGTATGGACAGCTATCTCTCGAGCACAGGTTCTGCCTCAATGGGAAAATAAACTGGAGCACC
TAACAACGCATCTTCACAGACCAAGAACTACGAGATCACCCCCTTCATTCTGGGGTGACGGAGGGATCGT
ACCATTCGAGCCTTTTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTTCAATCAATAGGATTTCC
CTAATCCTCCCTTCCCGAAAGGAAGAGCGTGAAATTATTTTTCCTTTCCGCAGGGACCAGGAGATTGGAT
CTAGCCGTAAGAAGAATGCTTGGTATAAATAACTCACTTCTTGGTCTTCGATCGACCCCCTCAGTCACTA
CGAACGCCCCTGATCAGTGCAATGGGATGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGGTT
TGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTCTCTCTTAACGCCTTCTTTTTTATTCTC
ATCGGAGTTATTTCACAAAGACTTGCCAGGGTAAGGAAGAAGGGGCGAACAAGCACACTTGGAGAGCGCA
GTACAACGTAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCTATTGATTCTA
TCCCAGGACCGTAGGTGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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