The detailed information of tRNA gene sequence


Sequence ID>CHL1899102618
Genome IDKF866298
Search identical group
Phylum/ClassViridiplantae
SpeciesJuniperus monosperma (KF866298)
Start position on genome 55836
End posion on genome 56794
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
ggggcctacT
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGCC
CAGGATAGCCCACCC
Downstream region at tRNA end position 
Attatgcgct
Secondary structure (Cloverleaf model)
>CHL1899102618	Ile	GAT
                   T      ACCC Attatgcgct
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T
                     T - A          C G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=882 (in A-loop)
ACTGCGTCGTTGTGCCTGGACTGTGAAGGCTATCAGCCACATGGATAGTTCAATGTGCTCATCAACGCCT
GACCCAGAGATGTGGATCATCTAAGGCACATTAGCATGGCGTACTCCTTCTGTTCGAACCAGGGTTGAAA
ACTGACTTTTTTTTAGCAGGAGGATAGATGAGGTGATTAAGGTGAGATCGAATGTAGATCAAATTTTCTA
TTCATTCGTGGGATCTGGGCGGTCCTGGGCAGCCATGTATTTTGGCTACCTTTTTTCGAGAATCCATGCA
TATCTTATCAGTGTATGGAAGGCTATCTCTCGAGCACAGGCTTAAGTTCTTATTATTAAGCCTAAATGTG
TAAAAAAACACCTAACAACACATCTTCACAGACCAAGAACTACGAGATCACTTTTTATTCTAGGGTGACG
GAGGGATCATATCATTCGAATTCATGCTTTTTTCTTTGCGTGGGATGCGGGAAATATAGTAAGTATAGGT
CCGGCCGAGAGACTTTTTCTTTCTAAACCTATATGGATAGTTAAATACTTGCTCGGTCTTCGACTCGTTC
AATTACTATGAACAATTTCCGGATCAGTAGATTAGGAAATCGTTATTCGTCTCCTAATAAACGATGAGAA
AAGCAGGATCGAAAAAGGATCTTGGAGTGTCTGGGATTGGGTTAGGAGGATCTTATTAATACCTCCTTTT
CTCTTCTCATCCAAATTTTGACTTCTTTTCTTGCCGTTGGTGAAGAAAAAGGAAGGAGAGCAAGTACACT
TGGAGAGCGCAGTACAGCGGAAAATTGTATGCTGTGTTCGGGAAGGATGAGTCGCTCCTGAATGAAGAGA
GAACTTATTTTCATCGAATCATAGGTGCGATTATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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