The detailed information of tRNA gene sequence


Sequence ID>CHL1899102710
Genome IDKJ000048
Search identical group
Phylum/ClassViridiplantae
SpeciesEchinochloa oryzicola STB03 (KJ000048)
Start position on genome 124381
End posion on genome 123483
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position
ttggctcggg
tRNA gene sequence
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAgcc
Downstream region at tRNA end position
cgtgaactta
Secondary structure (Cloverleaf model)
>CHL1899102710	Ala	TGC
                   g      Agcc cgtgaactta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=826 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGCTGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACTGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAAAGATGGGCTGTCAAAAAGGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTAC
ATGGACGATAGTTGGAGTCGGCGGCTCTCCTAGGCTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAA
GTTGGCCCTTGCGAATAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGTGGCAAAAGGAAG
GAAAATCCATGGACCGACCCCATTGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCG
GCGTCCAGGGGTCACGGACCGACCATAGACCCTGTTCAATAAGTGGAACACATTAGCCGTCCGCTCTCCG
GTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCGTTCTTAAAACCAGCATTCTTAAGTTAAGATCAAA
GAGTCGGGCGGAAAAAGGGGAGAGCTCCCCGTTCCTGGTTCTCCTGTAGCTGGATTCCCCGGAACCACAA
GAATCCTTAGAATGGGATTCCAACTCAGCACCTTTTGTTTTGAGATTTTGAGATTTTGAGATTTTGAGAA
GAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGCCTATC
GTTGTCCTCTATGGTAGCACCCGTCGGGGAGGCCTGAGAGGCGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK