The detailed information of tRNA gene sequence


Sequence ID>CHL1899103847
Genome IDKP119739
Search identical group
Phylum/ClassViridiplantae
SpeciesOrthotrichum rogeri (KP119739)
Start position on genome 88402
End posion on genome 89258
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cctgcacgaT
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGTATAGCCCAGCt
Downstream region at tRNA end position 
gcgccaaggg
Secondary structure (Cloverleaf model)
>CHL1899103847	Ile	GAT
                   T      AGCt gcgccaaggg
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T
                     T - A          T G
                    T     T G A C C     A
        G A        A        | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=782 (in A-loop)
ATTGCGTCGTTGTGTTTGGACTGTGAAGGCTCTCAGCCACATAGATAGTTTAATGTGCTCATTACCGCCT
GACCCAAAGATGTTTATCTTTATCATCTAAGGCACCTTAGCATGGCGTATTCCTCTTATTTCAACTAGGT
TTTTAGATTGAAAAATTTTTAGGAGGATGAATGAGGCGATTCAGGTGAAATCTAATGGGAATTCAACTTG
CCATTCACTAGTGGGATCTGGGCGGTCCAAGAGGGGTTTGAATTATTTGAAATTCCACTCTTCTCAAAAT
TCTATATATTCCTTATCAGTATATGGATAACTATCTTTTGAGCACAGGTTGAAATTCAGCCTATAAGTGA
AAAATGGAGCACCTAAATAACGCATCTTCACAGACCAAGAACTACGAGATCACCTTTTTTTCATTTTAGG
GTGACGGAGGGATCATACCATTCGAGCCTTTTCCTGTTTTTTTGAAGGTCCAAAAAAAACAGCAATTAAT
ATTATTTATCTGTGGAATGTTCTTATTTATTTTCTAACGGTCATTTTGGTTCGAAAAAGGATCTTAGAGT
GTTCAGGGTTGAATTAAAAAGATAGTATTGTAACGCTTTCTTTTTTCTCATCGAAGTTCTCTTTTTGAAA
CTTATTATTATTAATAAATAATAAAAAAAAGTAGAGAATAAGCACACTTGGAGAGCGCATTACAACAAAA
AGTTGTATGCTGCGTTCGGGAAGAATGAATCGCTCCTATAAAATATTTATTATCTTTCAAGTAGGTGCGA
TAATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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