The detailed information of tRNA gene sequence


Sequence ID>CHL1899104646
Genome IDKR873010
Search identical group
Phylum/ClassViridiplantae
SpeciesPinus bungeana (KR873010)
Start position on genome 85697
End posion on genome 86761
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cctgcacgaT
tRNA gene sequence 
GGGCTATTAGCTCAGCGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATAGCCCAGCt
Downstream region at tRNA end position 
gcgccaggga
Secondary structure (Cloverleaf model)
>CHL1899104646	Ile	GAT
                   T      AGCt gcgccaggga
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      C     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=990 (in A-loop)
ATCGCGTCGTTGTGCCTGGGCTGTGAAGGCTCTCAGTCACATGGATAGTTCAATGTGCTCATCAGCGCCT
GACCCGGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTTGTTCGAACCGGGGTT
TGGAACTGAACTTATCCTCAGGAGGATAGATGGAGCGATTCAGGTGAGATCGAATGCAGATCCAACTTTC
TATTCATTTGTGGACCTGGGCGGTCCGGGGGGGCCGGTGGTTATCCACCACGGATCCTCTCTTCTCGAGA
ATCCATACATCCCTTATCAGTGTATGGATGGCTATCTCTCGGGCACAGGTTGAAGTTCAGCCTAGATGTG
GAAAATAGAGCACCTAACAACGCATCTTCACAGACCAAGAACTACGGGATCACCCTTTTCATTCTAGGTA
GGGTGACGGAGGGATCATACCATTCGAGCCTTTTCATGCTTTTGCTGAAGGTCCGTAGGAAACAGGAATC
GATAGGATCTCCTCATTATTCCCTAAAGGAATAATGTGAAATCAAATTCTATCAATTCATTTTCCGCAGG
GTCCAGTAGATTGGATCTAGTCATAAGAATAGAAGAATGCTTGGTGTAAATAAAAATAACTCCTTGGTCT
TCGACCCCCCACTACGAACGGCCCTTGGATCAGTGCAACGGATGGGATGTCTTTATCCATCTCCTCACGA
TGGGAGCAGAGCAGGTTCGAAAAAGGATCTTGGAGTGTCCCGGGGTTGGGCCAGGAGGGTCTTTCAACGC
CTCCTTTTCTCATCAAAAGTGATTTCCATTTGCTCGCCGTTGGCTCGGTAAGGAAATAAAAAGAAAAGGA
AGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGAGGAAGTTGTATGCTGCGTTCGGGAAGGATG
AATCGCTCCTGAAAAAGAATCTATTGATTCTCTTCCAATTAGTTGATTGGATAGTATTGCAGGTGCGAGG
ATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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