The detailed information of tRNA gene sequence


Sequence ID>CHL1899104753
Genome IDKT220691
Search identical group
Phylum/ClassViridiplantae
SpeciesPerilla frutescens var. hirtella (KT220691)
Start position on genome 102633
End posion on genome 103523
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCACGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAact
Downstream region at tRNA end position 
catgaactta
Secondary structure (Cloverleaf model)
>CHL1899104753	Ala	TGC
                   g      Aact catgaactta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       C
                  T       A *
                    T G C
intron: position=38, length=818 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCAGTAATGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCATACAT
GGACGGTAGTTGGAGTCGGCGGCTCTCCCAGGGTCCCTCATCTGAGATCCCTGGGGAAGAGGATCAAGTT
GGCCCTTGCGAACAGCTTGGTGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGAAAAGGA
AGGAAAATCCATGGACCGACCCCATCATCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGGTGCCTT
CGGCATCCAGGGGTCACGGACCGACCATAGAACCCTGTTCAATAAGTGGAACGCATTAGCTGTCCGTTCT
CAGGTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACTTAAAACCAGCGTTCTTAAGA
CCAAAGAGTCGGGCGGAAAGGGGGGGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGAACCTCCGGAACCAC
AAGAATCCTTAGTTAGAATGGGATTCCAACTCAGCACCTTTTGTTTTGAGTGAGATTTTGAGAAGAGTTG
CTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGC
CTCTATGGTAGAATCAGTCGGGGGCATGAGAGGCGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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