The detailed information of tRNA gene sequence


Sequence ID>CHL1899105122
Genome IDKT601210
Search identical group
Phylum/ClassViridiplantae
SpeciesSciadopitys verticillata (KT601210)
Start position on genome 13516
End posion on genome 12642
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
gaccgggtaT
tRNA gene sequence 
GGGGATATAGCTCAGTGGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAGCC
Downstream region at tRNA end position 
cgtgaccttg
Secondary structure (Cloverleaf model)
>CHL1899105122	Ala	TGC
                   T      AGCC cgtgaccttg
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    G       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=798 (in A-loop)
ATTGGGTCGTTGTGATTACGGGTTGGATGTCGCATTGTTTAGGCGGTAATGATAGTATTTTTTACCCAAG
CCAGTGGCTCACTTTTTTTCAGTAATGGGGAAGAGAACAGGAACATGCCATAGAAAAGCTCTACTGAGAC
GAAGATAAGCGGTCTCAATACCGTAGAGAAGGTAGGGTGGGTAGTTGGTTAGATCTAAGTATGGATCGTA
CATGGGCGATAGTTGGAGTTGGCGGCTCCCCTAGGGTTCCCTCATCTGGGATATCTGGGTAAGAGAATCA
AGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCTATTCAACCCTTTTATTTGAACTATTTTAAAAGGA
AAAGCTATGCCATGGATTGACCCCATCGTCTCCACCCCGTAAGAACTTCGAGATCACTCCAAGGATACCT
TCGGTATCCAGGGGTTACAGACCGACCATATACACTGATTCCGAGAAGTGGAACGCATTTATGTTCGCTC
CGGTTGGACAGGAAGGGTTGGAGAAGGGCAATGAATCATTGTTAAGAACAAAAAGTTGGGTGAAAAAAAG
GGGGAAGCTTTTTGCTTCAGCTTTTTTTTAGCTGTTCTAGAGCTGGATACTCTAGAAGTACAAGAATACC
TGCTTGAGCTGAGTATTCCAACTCAACAACTCTTTGGAAGAGTTGCTCTTTGGAGAGCACAGTACAACGA
AAGTTGTGAGCTGTGTTCGGGGGGGGCTATTGTCTATTGTTGGTTTGGCCCCGATGGTAGAATCATTGGG
GAGGCCTGAAAGACATTGGTTTGTCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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