The detailed information of tRNA gene sequence


Sequence ID>CHL1899105513
Genome IDKT881176
Search identical group
Phylum/ClassViridiplantae
SpeciesOenothera oakesiana ammophila Standard (KT881176)
Start position on genome 107245
End posion on genome 108262
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccgcacaac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaagga
Secondary structure (Cloverleaf model)
>CHL1899105513	Ile	GAT
                   c      Agct gcgccaagga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=946 (in A-loop)
ATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGCGCCT
GACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTTCTCCTGTTCGAACCGGGTTTGAAA
CCAAACCCCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTC
ACTCGTGGGATCCGGGCGGTCCGGGGGGGACCACCAGGCTCCTCTCTTCTCGAGAATCCATACATCCCTT
ATCAGTGTATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATGAAATGGAGC
ACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTTATTCTGGGGTGACGGAGGGAT
CGTACCATTCGAGCCTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTGCAATCAATAGGATTTTC
CTAATCCTCCCTTCCCGAAAGGAAGCACGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGATTGGAT
CTAGCCGTAAGAAGAATGCTTGGCTGATAAATAACTCACTTCTTGGTCTTGCGACCCCCTCAGTCACTAC
GAACGCCTCCGATCAGTGCAATGGGATGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGGTTT
GAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTTTCTTAACGCCTTCTTTTTTCTTCTCATC
GGAGTTATTTCACAAAGACTTGCCAGGGTAAGGAAGAAGGAGGGAATAAGCACACTTGGAGAGCGCAGTA
CAACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCTATTGATTCTCTCC
CAATTGGTTGGACCGTAGGTGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK