The detailed information of tRNA gene sequence


Sequence ID>CHL1899105514
Genome IDKT881176
Search identical group
Phylum/ClassViridiplantae
SpeciesOenothera oakesiana ammophila Standard (KT881176)
Start position on genome 108327
End posion on genome 109198
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAact
Downstream region at tRNA end position 
cgtgaactta
Secondary structure (Cloverleaf model)
>CHL1899105514	Ala	TGC
                   g      Aact cgtgaactta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=799 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCGGGCGGTAATGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGGATCGTACATGGAC
GGTAGTTGGAGCCGGCGGCTCTCCTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGC
CCTTGCGAACAGCTTGATGCACTATCCCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAAT
CCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGCATCC
AGGGGTCACGGACCGACCATAGAATCCTGTTCAATAAGTGGAACGCATTAGCTGTCCGCTCTTAGGTTGA
GCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCATTCTTAAGACCAAAGAGTCGGGCG
GAAAAGGGGGGAAAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGATCCTCCGGAACCGCAAGAATCCTTA
GTTAGAATGGGATTCCAACCCAGCACCCTTTGAGATTTTAAGAAGAGTTGCTCTTTGGAGAGCACAGTAC
GATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTGGAATCAGCCG
GGGGGCCGGAGAGGCGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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