The detailed information of tRNA gene sequence


Sequence ID>CHL1899106502
Genome IDKU646490
Search identical group
Phylum/ClassViridiplantae
SpeciesEntransia fimbriata (KU646490)
Start position on genome 107799
End posion on genome 108671
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
gagaaagtcg
tRNA gene sequence 
GGGGGTATAGCTCAGTTGGTAGAGCGCTGTCTTTGCATGGCAGACGTCAGCGGTTCGAGT
CCGCTTACCTCCAggg
Downstream region at tRNA end position 
gagtatgtat
Secondary structure (Cloverleaf model)
>CHL1899106502	Ala	TGC
                   g      Aggg gagtatgtat
                     G - C
                     G - C
                     G + T
                     G - C
                     G - C
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     ACGTC
                    C - G
                    T - A
                    G - C
                    T + G
                    C - G
                  T       T
                  T       A *
                    T G C
intron: position=38, length=800 (in A-loop)
ATTGCGCCGTTGAATGAATTTTTACACATGTAACGCCCATAGGGCGTCTTCGTGAACAAAAAAAGAAGAC
TAATAAAACACCCGCAGGGTGTTTGACGTCAATTAAGCCCACGTCTTACTTCCATCTAAAAAGGGTAGGA
AGGACTAGAAGCACGACGTATCTTGTTTTTTCATTATCTATGTTATTAATCATTGCTTTCTGGCAGCCTG
TCGTTAGCTATAGTTCTATAGATATATTTTGATGGACAAGTGGGAAAATATTTATAACATTGAGTTCTTT
TATGGTTCGGTCTGTAAAGATCATAGACGAATCTTGTTTATAGTCTTGGCAGGATTTTTTAGGGCCATAG
CTCTAGATCGAAGTATCACTTTGTACCTATGCGAACAAAGTGGTTATTGACTGGCTTAGATCACATATAA
AAAAAAAGATAAATCGTCAACCATTTCTTATTGAACTACTTTATAAACACAACGGGATAGCCTTAAAGGA
AAAATTCTTATGGTTAAAGAAAAGTCATACTAGCCAAGGTGGTGGTGAAACCTCTTCAATGGGTTTTATC
CAGGCGGGCCTAAGGCCTTTTTGGGTTGTGCCTCTTTATGGTTAGGGAAGGACGTTAGGAAGGTATCAGA
TTCCATCAACATGGTGGTGATAAAATTTCCTCAATGGGGCGAGAATCCATTGAGTAGTTCCTCCTAGAGA
GCTCAGTGCAATGAAAATGGCATGCTGAGTTCGGAGGGGATTGAACAATCTTGACATCTTCGAAGGAGGA
TGCTATTCTATAGGAGCGTTCAGGCCTCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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