The detailed information of tRNA gene sequence


Sequence ID>CHL1899106508
Genome IDKU646493
Search identical group
Phylum/ClassViridiplantae
SpeciesColeochaete scutata (KU646493)
Start position on genome 2474
End posion on genome 3132
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
agttttattT
tRNA gene sequence 
GGGGGTATAGCTCAGTGGTAGAGCGCCGTCCTTGCATGGCGGACGTCAGCGGTTCAAGTC
CGCTTACCTCCAGta
Downstream region at tRNA end position 
ttaagaataa
Secondary structure (Cloverleaf model)
>CHL1899106508	Ala	TGC
                   T      AGta ttaagaataa
                     G - C
                     G - C
                     G + T
                     G - C
                     G - C
                     T - A
                     A - T          T G
                    T     T C G C C     A
        G A        A      | | | | |     A
      T     C T C G       A G C G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     ACGTC
                    C - G
                    C - G
                    G - C
                    T + G
                    C - G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=585 (in A-loop)
ATTGAGTCGTTGTGTTTTCAGTTCGAGTTTCTAGATATCTAGACAGTAATCTATAGTTTTTTACTGATAA
TATTGGCTAACTTTTTTTTATAATTGATAAAAAGGAAAAAAACATGCCAAAAGATTTATTTAAATTAAAT
AATAAATCTAAAATGAGTTATTTGTTAATTTTTTAAAATTGCTAGAGTTGACAACTCTCCTATACTATTT
AATTTTAAATAGGGAAGATTCTAAAAGTAAGTCTTGTGAATACTTTTCATAACTATAATTCTTCAGCATT
ATTTCTACCATTGAAAAATAGTCTATTATTAACTTTAATTCGTAATTTCATTCCGTAAACACTTCGAGAT
TGCCCTGTTCGTAAAAGAATTTTAGGGTTACAGACCGACTGTTTATGTTTTAATAATATATTCAAGAGTC
GGAAAAGGGAGTTAATATTCGCTAATCTATTAGATTTTTGAATTACCCTTTAGAGAGCACAGTACTATGT
AAATTGTAAGCTGTGTTCGGAGGGGAGTTATTTTTGACTTTGAATATCATAAACTTATTCGTGATAACTA
ATCAAATCAACAATGTCTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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