The detailed information of tRNA gene sequence


Sequence ID>CHL1899106556
Genome IDKU724130
Search identical group
Phylum/ClassViridiplantae
SpeciesStenogyne haliakalae GEO5 (KU724130)
Start position on genome 98928
End posion on genome 99936
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
ctcgcacgac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaggga
Secondary structure (Cloverleaf model)
>CHL1899106556	Ile	GAT
                   c      Agct gcgccaggga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=937 (in A-loop)
ATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCGGCGCCT
GACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTCGAACAGGGGTTTGAA
ACCAAACCTCTCCTCAGGAGGATCGATGGGGCGATTCGGGTGAGATCCAATGTAGATCCAACTTTCGATT
CACTCGTGGGATCCGGGCGGTCCGGGGGGGGACCACCGCGGCTCCTCTCTTCTCGAGAATCCATACATCC
CTTATCAGTGTATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAAGAAAATGG
AGCACCTAACAACGCATCTTCACAGACCAAGAACTACGAGATCACCCCAGAATGAAGGGGGTGACGGAGG
GATCGTACAATTCGAGCCGTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTGCATTTCCCTAATC
CTCCCTTCCCGAAAGGAAGAGCGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGATTGGATCTAGCC
ATAAGAAGAATGCTTGGTATAAATAACTCACTTCTTGGTCTTCGACCCCCTCAGTCACTACGAACGCCCC
CGATCAGTGCAATGGGATGTGTCTATTTATCTATCTCTTGATTCGAAATGGGAGCAGGTTTGAAAAAGGA
TCTTAGAGTGTCTAGGGTTGGGCCGGGCGGGTCTCTTAACGCCTTCTTTTTTCTTCTCATCAGAGTTATT
TCACAAAGACTTGCCGGGGTAAGGAAGAAGGGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGA
GTTGTATGCTGCGTTCGGGAAGGATGAATCGCTACCGAAAAGGAATCTATTGATTCTCTCCCAATTGGTT
GGACCGTAGGTGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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