The detailed information of tRNA gene sequence


Sequence ID>CHL1899106558
Genome IDKU724130
Search identical group
Phylum/ClassViridiplantae
SpeciesStenogyne haliakalae GEO5 (KU724130)
Start position on genome 131099
End posion on genome 130221
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCCCTTGCACGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAact
Downstream region at tRNA end position 
catgaactta
Secondary structure (Cloverleaf model)
>CHL1899106558	Ala	TGC
                   g      Aact catgaactta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A *
                    T G C
intron: position=38, length=806 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCAGTAATGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCATACAT
GGACGGTCGTTGGAGTCGGCGGCTCCCCCAGGGTCCCTCATCTGAGATCCCTGGGGAAGAGGATCAAGTT
GGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGAAAAGGA
AGGAAAATCCATGGACCGACCCCATCATCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGGCGCCTT
CGGCATCCAGGGGTCACGGACCGACCATAGAACCCTGTTCAATAAGTGGAACGCATTAGCTGTCCGTTCT
CAGGTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCGTTCTTAAGACCAAAGA
GTCGGGCGGAAAAAGGGGGGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGAACCTCCGGAACCGCAAGAAT
CCTGAGTTAGAATGGGATTCCAACTCAGCACCCTTTGAGTGAGATTTTGAGAAGAGTTGCTCTTTGGAGA
GCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGAGGGGGTTATTGTCTATCGTTGGCCTCTATGGTAGA
ATCAGTCGGGGGCACGAGAGACGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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