The detailed information of tRNA gene sequence


Sequence ID>CHL1899106604
Genome IDKU724139
Search identical group
Phylum/ClassViridiplantae
SpeciesStachys coccinea CL1003 (KU724139)
Start position on genome 99338
End posion on genome 100346
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
ctcgcacgac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaggga
Secondary structure (Cloverleaf model)
>CHL1899106604	Ile	GAT
                   c      Agct gcgccaggga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=937 (in A-loop)
ATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCGGCGCCT
GACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTCGAACAGGGGTTTGAA
ACCAAACCTCTCCTCAGGAGGATCGATGGGGCGATTCGGGTGAGATCCAATGTAGATCCAACTTTCGATT
CACTCGTGGGATCCGGGCGGTCCGGGGGGGGACCACCGCGGCTCCTCTCTTCTCGAGAATCCATACATCC
CTTATCAGTGTATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAAGAAAATGG
AGCACCTAACAACGCATCTTCACAGACCAAGAACTACGAGATCACCCCAGAATGAAGGGGGTGACGGAGG
GATCGTACAATTCGAGCCGTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTGCATTTCCCTAATC
CTCCCTTCCCGAAAGGAAGAGCGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGATTGGATCTAGCC
ATAAGAAGAATGCTTGGTATAAATAACTCACTTCTTGGTCTTCGACCCCCTCAGTCACTACGAACGCCCC
CGATCAGTGCAATGGGATGTGTCTATTTATCTATCTCTTGATTCGAAATGGGAGCAGGTTTGAAAAAGGA
TCTTAGAGTGTCTAGGGTTGGGCCGGGCGGGTCTCTTAACGCCTTCTTTTTTCTTCTCATCAGAGTTATT
TCACAAAGACTTGCCGGGGTAAGGAAGAAGGGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGA
GTTGTATGCTGCGTTCGGGAAGGATGAATCGCTACCGAAAAGGAATCTATTGATTCTCTCCCAATTGGTT
GGACCGTAGGTGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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