The detailed information of tRNA gene sequence


Sequence ID>CHL1899106619
Genome IDKU724141
Search identical group
Phylum/ClassViridiplantae
SpeciesStachys byzantina CL1004 (KU724141)
Start position on genome 98855
End posion on genome 99864
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
ctcgcacgac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaggga
Secondary structure (Cloverleaf model)
>CHL1899106619	Ile	GAT
                   c      Agct gcgccaggga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=938 (in A-loop)
ATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCGGCGCCT
GACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTCGAACAGGGGTTTGAA
ACCTCTCCTCAGGAGGATCGATGGGGCGATTCGGGTGAGATCCCATGTAGATCCAACTTTCGATTCACTC
GTGGGATCCGGGCGGTCCGGGGGGGGACCACCACGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTAT
CAGTGTATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAAGAAAATGGAGCAC
CTAACAACGCATCTTCACAGACCAAGAACTACGAGATCACCCCAGAATGAAGGGGGTGACGGAGGGATCG
TACCATTCGAGCCGTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTTCATTTCCCTAATCCTCCC
TTCCCGAAAGGAAGAGCGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGATTGGATCTAGCCATAAG
AAGAATGCTTGGTATAAATAACTCACTTCTTGGTCTTCGACCCCCTCAGTCACTACGAACGCCCCCGATC
AGTGCAATGGGATGTGTCTATTTATCTATCTCTTGATTCGAAATCGAAATGGGAGCAGGTTTGAAAAAGG
ATCTTAGAGTGTCTAGGGTTGGGCCGGGAGGGTCTCTTAACGCCTTCTTTTTTCTTCTCATCAGAGTTAT
TTCACAAAGACTTGCCGGGGTAAGGAAGAAGGGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAG
AGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTACCGAAAAGGAATCTATTGATTCTCTCCCAATTGGT
TGGACCGTAGGTGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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