The detailed information of tRNA gene sequence


Sequence ID>CHL1899106620
Genome IDKU724141
Search identical group
Phylum/ClassViridiplantae
SpeciesStachys byzantina CL1004 (KU724141)
Start position on genome 99929
End posion on genome 100807
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCACGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAact
Downstream region at tRNA end position 
catgaactta
Secondary structure (Cloverleaf model)
>CHL1899106620	Ala	TGC
                   g      Aact catgaactta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       C
                  T       A *
                    T G C
intron: position=38, length=806 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCAGTAATGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCATACAT
GGACGGTCGTTGGAGTCGGCGGCTCCCCCAGGGTCCCTCATCTGAGATCCCTGGGGAAGAGGATCAAGTT
GGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGAAAAGGA
AGGAAAATCCATGGACCGACCCCATCATCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGGCGCCTT
CGGCATCCAGGGGTCACGGACCGACCATAGAACCCTGTTCAATAAGTGGAACGCATTAGCTGTCCGTTCT
CAGGTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCGTTCTTAAGACCAAAGA
GTCGGGCGGAAAAAGGGGGGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGAACCTCCGGAACCGCAAGAAT
CCTGAGTTAGAATGGGATTCCAACTCAGCACCCTTTGAGTGAGATTTTGAGAAGAGTTGCTCTTTGGAGA
GCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGAGGGGGTTATTGTCTATCGTTGGCCTCTATGGTAGA
ATCAGTCGGGGGCATGAGAGACGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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