The detailed information of tRNA gene sequence


Sequence ID>CHL1899107591
Genome IDKX118606
Search identical group
Phylum/ClassViridiplantae
SpeciesOenothera villaricae berteriana Schwemmle (KX118606)
Start position on genome 146562
End posion on genome 145545
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccgcacaac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaagga
Secondary structure (Cloverleaf model)
>CHL1899107591	Ile	GAT
                   c      Agct gcgccaagga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=946 (in A-loop)
ATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGCGCCT
GACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTTCTCCTGTTCGAACCGGGTTTGAAA
CCAAACCCCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTC
ACTCGTGGGATCCGGGCGGTCCGGGGGGGACCACCAGGCTCCTCTCTTCTCGAGAATCCATACATCCCTT
ATCAGTGTATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATGAAATGGAGC
ACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTTATTCTGGGGTGACGGAGGGAT
CGTACCATTCGAGCCTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTGCAATCAATAGGATTTTC
CTAATCCTCCCTTCCCGAAAGGAAGCACGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGATTGGAT
CTAGCCGTAAGAAGAATGCTTGGCTGATAAATAACTCACTTCTTGGTCTTGCGACCCCCTCAGTCACTAC
GAACGCCTCCGATCAGTGCAATGGGATGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGGTTT
GAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTTTCTTAACGCCTTCTTTTTTCTTCTCATC
GGAGTTATTTCACAAAGACTTGCCAGGGTAAGGAAGAAGGAGGGAATAAGCACACTTGGAGAGCGCAGTA
CAACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCTATTGATTCTCTCC
CAATTGGTTGGACCGTAGGTGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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