The detailed information of tRNA gene sequence


Sequence ID>CHL1899108902
Genome IDKX784048
Search identical group
Phylum/ClassViridiplantae
SpeciesParis polyphylla var. chinensis (KX784048)
Start position on genome 105139
End posion on genome 106012
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cctggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTTTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAgcc
Downstream region at tRNA end position 
cgtgaactta
Secondary structure (Cloverleaf model)
>CHL1899108902	Ala	TGC
                   g      Agcc cgtgaactta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  T       T
                  T       A *
                    T G C
intron: position=38, length=801 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAAGGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATAGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGTAGTTGGTCAGATCTAGTATGGATCGTAC
ATGGACGATAGTTGGAGTCGGCGGCTCTCCTGGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAA
GTTGGCCCTTGCAAATAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATAGGAAGGAAAATCC
ATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCGCCCCAAGGACGCCTTTGGCATCCAG
GGGTCACGGACCGACCATAGGCCCTGTTCAACTGTTCAATAAGTGGAACGCATTAGCTGTCTGCTCTCCG
GTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCGTTCTTAAAACCAGCATTCTTAAGACCAAAGAGTC
GGGCGGAAAAAGGGGGAGAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGATTCTCCGGAACCACAAGAAT
CCTTAGAATGGGATTCCAACTCAGCACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTA
CGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGTC
GGGGAGGCCTGAGAGGCAGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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