The detailed information of tRNA gene sequence


Sequence ID>CHL1899108904
Genome IDKX784048
Search identical group
Phylum/ClassViridiplantae
SpeciesParis polyphylla var. chinensis (KX784048)
Start position on genome 139144
End posion on genome 138133
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccacacgac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATGGCCCAgct
Downstream region at tRNA end position 
gcgccaggga
Secondary structure (Cloverleaf model)
>CHL1899108904	Ile	GAT
                   c      Agct gcgccaggga
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=940 (in A-loop)
ATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGAATAGTTCAATGTGCTCATCAGCGCCT
GACCCGGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTCCTCCTGTTCGAATCGGAGTTTGAA
ACCAAACTTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCTAACTTTCTATT
CACTCGTGGGATCCGGGCGGTCCGGGGGGGACCACCGCGGCTCCTCTCTTCTCGAGAATCCATACATCCC
TTATCAGTGTATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGGCCTCAATGGGAAAATGGAGCACC
TAACAACGCATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGAGGGATCGT
ACCATTCGAGCCTTTTCTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCAGCAATCAATAGGATTTCCCT
AATCCTCCCTTCCCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCCGCAGGGACCGGGAGATTGGATCT
AGCCATAAGAAGAATGCTTGGTATAAATAACTCACTTCTTGGTCTTCGACCCCCTCAGTCACTACGAGCG
CCCCCCGATCAGTGCAATGGGATGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGGTTTGAAA
AAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTCTCTTAACGCCTTCTTTTTTCTTCCCATCGGAG
TTATTTCACAAAGACTTGCCATGGTAAGGGAGAAGGGGGAACAAGCACACTTGAAGAGCGCAGTACAACG
GAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGAATCTATTGATTCTCTCCCAATTG
GTTGGATCGTAGGTGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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