The detailed information of tRNA gene sequence


Sequence ID>CHL1899109235
Genome IDKX831887
Search identical group
Phylum/ClassViridiplantae
SpeciesMedicago falcata 1210 (KX831887)
Start position on genome 25339
End posion on genome 24579
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cccacacaac
tRNA gene sequence 
GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGTC
CAGGATAGCCCAgct
Downstream region at tRNA end position 
gcgccaagga
Secondary structure (Cloverleaf model)
>CHL1899109235	Ile	GAT
                   c      Agct gcgccaagga
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T
                     T - A          T G
                    T     G G A C C     A
        G A        A      + | | | |     A
      T     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=689 (in A-loop)
ATTGCGTCGTTGTGCCTGGACTGTGAGGGCTCTCAGCCACATAGATAGTTCAATGTGCTCATCGGCGCCT
GACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTTCTCCTGTTTGAACCGGGGTTTGAA
ACCAAACTTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATT
CACTCGTGGGATCCGGGCGGTCCAGGGGGGACCATCATGGCTCCTCTCCTCTCGAGAATTCATATATCCC
TTATCAGTATATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTTGGCCTCAATAGAAAAAGAAAAACGG
AGCACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCACCTCTTTCATTCTGGGGTGACGGCGG
GATCGTACCATTCTCTTGACTCGAAATGGGAGCAGGTAAGAAAAAGGATCTTAGAGTGTCTCTTAACGCC
TTCTTTTTTCTTCTCATCAGAGTTATTGTTATTCCACAAATACTTATCATGGTAAGGAAGAAGGGGAAAC
AAGCACACTTGGAGAGCGCAGTACAATGGATAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTCCCGA
AAAGGAATCTATTGATTCTCTCCCAATTGGATGGACCGTAGGTGCGATGATTTACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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