The detailed information of tRNA gene sequence


Sequence ID>CHL1899110540
Genome IDKY427355
Search identical group
Phylum/ClassViridiplantae
SpeciesPseudophegopteris aurita (KY427355)
Start position on genome 141321
End posion on genome 142408
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
cctgcataaT
tRNA gene sequence 
GGGCTATTAGCTCAGCGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAGCC
CAGGATAGCCCAGtt
Downstream region at tRNA end position 
gcgccgaggg
Secondary structure (Cloverleaf model)
>CHL1899110540	Ile	GAT
                   T      AGtt gcgccgaggg
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T
                     T - A          C G
                    T     G G A C C     A
        G A        A      + | | | |     A
      C     C T C G       T C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=1014 (in A-loop)
ATTGCGCCGTTGCGCCTGGACTGTGGAAACTTTTATTTATACACATGGGTAGTCTAATGTGCCCATCGAC
GCCTGACCCGAAGATGCATATCGTCCAAGGGACGTTAGCATGGCGTACTCTTCCAATTTTCGGGTAGCCT
GGGTCTCAGAACCAGGCTCCTTTTCAGGAGGAGATAGATGAGGCGACTCAGGTGAGATCTAGTGAAGATT
CAACCTCCGAATCACTGGTGGGATTCGGGCGATCCAGGGAGGATCGGTCATCGCTAGCAGATCCTCCTTT
CTCGGGAATCTATACATTCCTTATCAGTGTATAGATGGCTATCTCTCGGGCACAAACTGATGAACATCGA
GCCAGATGTGAAATACGGAGCACCTGATGACGCATATTCACAAACCAGGAACTACGGGAACACCTTATTC
TACTATTCTAGGGTAACGGAGGGATCACACTATACGAGCCTTTCCTGCTTCTCTCGAAGGTCCATAGAAG
CAGCAATCGACGGAACTTCCACGTGCAGGTAGGGCTCTAGGTCCCATAGATTTGAGTTCTTATCCGGGAA
GGCGGGAATACTGGACCCAGACATGAAAAAACTGCCGGAGGGAAAAGAAAGAGGTAAATCCCTGGTATTT
GCTCCAGCCCACTAATTGGCTATTCCAGATAGCTTCCAATTCTATGTACCGAGACGCCTCGGCCCCCCCC
CCTAAAAATAGGGGAAACAGGCTCAAAGAAAGATCCCAGAGTGTACGGGGACGGGGTTAAGCCAAGAGGG
TTTTTCGGCGCCTTCTCTTCCCTTCCATCGATCAAATGAGGTATATTTTTGCGAAGTCCTTGTCCCTACC
AAGGCAAGCAAAAGGGAAAGATGGAAGAAGTACACTTGGAGAGCGCAGTACAGCGGGTAGTTGTATGCTG
CGTTCGGGAAGGATGAGTCGCCTCTAAAAAGAGAAGTCTATTAATTCTCCACTTCAATGAGTGAGATACT
AATAAGAATAGTGTAGATGCGACTATTCACTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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